Chunrong Jia received funding from the Environmental Protection Agency, National Institutes of Health, and JPB Foundation. Abu Mohammed Naser Titu receives funding from the National Institute of ...

Not revised: This Reviewed Preprint includes the authors’ original preprint (without revision), an eLife assessment, public reviews, and a provisional response from the authors. The authors analyzed ...

What if you could transform the way you analyze data in just 12 minutes? Picture this: a mountain of raw numbers and spreadsheets that once felt overwhelming now becomes a treasure trove of actionable ...

This study introduces ambisim, a rigorously validated and well-documented simulation framework that enables the generation of synthetic, genotype-aware single-cell RNA and ATAC sequencing datasets ...

This repository contains a comprehensive ATAC-seq (Assay for Transposase-Accessible Chromatin using sequencing) analysis pipeline for analyzing chromatin accessibility changes between parental and ...

Transcription factors function in complex regulatory networks to regulate various biological and physiological processes. In soybean (Glycine max), GmLUX, as an important component of the evening ...

1 Human Molecular Genetics Research Unit, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, Poznań, Poland 2 Laboratory of High-Throughput Technologies, ...

SAVANA uses a machine learning algorithm to identify cancer-specific structural variations and copy number aberrations in long-read DNA sequencing data. The complex structure of cancer genomes means ...

Thank you very much for sharing your ATAC-seq analysis pipeline. We referred to your pipeline for analyzing our own ATAC-seq data. However, I have a question regarding one step described in the ...

Renin-expressing cells are myoendocrine cells crucial for the maintenance of homeostasis. Renin is regulated by cAMP, p300 (histone acetyltransferase p300)/CBP (CREB-binding protein), and Brd4 ...